Whole Exome sequencing - SRA

SRX194610: Whole Exome sequencing
8 ILLUMINA (Illumina HiSeq 2000) runs: 18.7M spots, 2.8G bases, 1.2Gb downloads

UUID: 380ffc0d-ce62-48ac-b865-cf8a17e166c5

Design: Whole Exome sequencing via in-solution hybrid selection

Submitted by: Broad Institute (BI)

Study: Exome sequencing of (LWK) Luhya in Webuye, Kenya HapMap population

Sample: Coriell GM19023

Library:

Name: Catch-169981

Instrument: Illumina HiSeq 2000

Strategy: WXS

Source: GENOMIC

Selection: Hybrid Selection

Layout: PAIRED

Spot descriptor:

1 forward77 reverse

lsid: broadinstitute.org:bsp.prod.sample:3DATP

project: C470

sample_barcode: 219621.0

target_set: whole_exome_agilent_1.1_refseq_plus_3_boosters

work_request: 31672

Name	Step	Program	Version	Notes
base caller	2012-08-24 23:24:57.0	GAPipeline	RTA1.13.48	Sequencer Application 1.5.15.1

Runs: 8 runs, 18.7M spots, 2.8G bases, 1.2Gb

Run	# of Spots	# of Bases	Size	Published
SRR588363	2,318,603	352.4M	157.4Mb	2012-10-13
SRR588369	2,407,528	365.9M	165Mb	2012-10-13
SRR588429	2,281,768	346.8M	153.6Mb	2012-10-13
SRR588430	2,330,556	354.2M	158.7Mb	2012-10-13
SRR588457	2,239,285	340.4M	149.6Mb	2012-10-13
SRR588469	2,316,150	352.1M	155.9Mb	2012-10-13
SRR588520	2,393,884	363.9M	164.2Mb	2012-10-13
SRR588539	2,394,067	363.9M	163.5Mb	2012-10-13

Supplemental Content

PREDICTED: Rattus norvegicus TLE family member 3, transcriptional corepressor (T...
PREDICTED: Rattus norvegicus TLE family member 3, transcriptional corepressor (Tle3), transcript variant X16, mRNA
gi|2678967128|ref|XM_006243220.5|

Nucleotide
PREDICTED: Hyposmocoma kahamanoa required for meiotic nuclear division protein 1...
PREDICTED: Hyposmocoma kahamanoa required for meiotic nuclear division protein 1 homolog (LOC113240691), transcript variant X3, mRNA
gi|1483650874|ref|XM_026478075.1|

Nucleotide
PREDICTED: Hyposmocoma kahamanoa ataxin-2 homolog (LOC113240681), transcript var...
PREDICTED: Hyposmocoma kahamanoa ataxin-2 homolog (LOC113240681), transcript variant X2, mRNA
gi|1483650824|ref|XM_026478051.1|

Nucleotide
Listeria monocytogenes cholesterol-dependent cytolysin listeriolysin O (hly) gen...
Listeria monocytogenes cholesterol-dependent cytolysin listeriolysin O (hly) gene, partial cds.
PopSet: 2735210262

PopSet
LOC102549347 uncharacterized LOC102549347 [Rattus norvegicus]
LOC102549347 uncharacterized LOC102549347 [Rattus norvegicus]
Gene ID:102549347

Gene

Your browsing activity is empty.

Activity recording is turned off.

SRA